2W8G Receptor date Jan 16, 2009
title Aplysia Californica Achbp Bound To In Silico Compound 35
authors C.Ulens, A.Akdemir, A.Jongejan, R.Van Elk, E.Edink, S.Bertrand, A. R.Leurs, A.B.Smit, T.K.Sixma, D.Bertrand, I.J.De Esch
compound source
Molecule: Soluble Acetylcholine Receptor
Chain: A, B, C, D, E
Fragment: Residues 20-236
Synonym: Acetylcholine-Binding Protein
Organism_scientific: Aplysia Californica
Organism_common: California Sea Hare
Organism_taxid: 6500
symmetry Space Group: C 2 2 21
R_factor 0.200 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.510 173.628 129.119 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand BS2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceUse of Acetylcholine Binding Protein in the Search for Novel alpha7 Nicotinic Receptor Ligands. In Silico Docking, Pharmacological Screening, and X-ray Analysis (dagger)., Ulens C, Akdemir A, Jongejan A, van Elk R, Bertrand S, Perrakis A, Leurs R, Smit AB, Sixma TK, Bertrand D, de Esch IJ, J Med Chem. 2009 Mar 30. PMID:19331415
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (2w8g.pdb1.gz) 168 Kb
  • LPC: Ligand-Protein Contacts for 2W8G
  • CSU: Contacts of Structural Units for 2W8G
  • Likely Quarternary Molecular Structure file(s) for 2W8G
  • Structure Factors (606 Kb)
  • Retrieve 2W8G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W8G from S2C, [Save to disk]
  • Re-refined 2w8g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W8G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W8G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W8G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w8g_B] [2w8g_D] [2w8g_E] [2w8g_C] [2w8g] [2w8g_A]
  • SWISS-PROT database: [Q8WSF8]
  • Domain organization of [Q8WSF8_APLCA] by SWISSPFAM
  • Other resources with information on 2W8G
  • Community annotation for 2W8G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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