2W9F Crystal Structure of CDK4 in complex with a D-type cyclin date
authors Day, P.J., Cleasby, A., Tickle, I.J., Reilly, M.O., Coyle, J.E., Holding, F.P., McMenamin, R.L., Yon, J., Chopra, R., Lengauer, C., Jhoti, H.
compound source
symmetry
R_factor
R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.85
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • cyclin-dependent protein ser...


    • Primary referenceCrystal structure of human CDK4 in complex with a D-type cyclin., Day PJ, Cleasby A, Tickle IJ, O'Reilly M, Coyle JE, Holding FP, McMenamin RL, Yon J, Chopra R, Lengauer C, Jhoti H, Proc Natl Acad Sci U S A. 2009 Feb 23. PMID:19237565
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (2w9f.pdb1.gz) 82 Kb
  • CSU: Contacts of Structural Units for 2W9F
  • Likely Quarternary Molecular Structure file(s) for 2W9F
  • Structure Factors (794 Kb)
  • Retrieve 2W9F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W9F from S2C, [Save to disk]
  • Re-refined 2w9f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2W9F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2W9F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2W9F, from MSDmotif at EBI
  • Fold representative 2w9f from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w9f_A] [2w9f] [2w9f_B]
  • SWISS-PROT database: [P24385] [P11802]
  • Domain organization of [CCND1_HUMAN] [CDK4_HUMAN] by SWISSPFAM
  • Domains found in 2W9F: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
    • Other resources with information on 2W9F
  • Community annotation for 2W9F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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