2WA2 Transferase date Feb 02, 2009
title Structure Of The Methyltransferase Domain From Modoc Virus, Flavivirus With No Known Vector (Nkv)
authors A.M.Jansson, P.Johansson, T.A.Jones
compound source
Molecule: Non-Structural Protein 5
Chain: A, B
Fragment: Ns5 Protein, Residues 2477-2744
Synonym: Ns5 From Modoc Virus
Engineered: Yes
Mutation: Yes
Organism_scientific: Modoc Virus
Organism_taxid: 64300
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_plasmid: Pcr T7
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.530 62.242 160.016 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand SAM, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the methyltransferase domain from the Modoc virus, a flavivirus with no known vector., Jansson AM, Jakobsson E, Johansson P, Lantez V, Coutard B, de Lamballerie X, Unge T, Jones TA, Acta Crystallogr D Biol Crystallogr. 2009 Aug;65(Pt 8):796-803. Epub 2009, Jul 10. PMID:19622863
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (2wa2.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (2wa2.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2WA2
  • CSU: Contacts of Structural Units for 2WA2
  • Structure Factors (608 Kb)
  • Retrieve 2WA2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WA2 from S2C, [Save to disk]
  • Re-refined 2wa2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WA2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WA2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WA2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e2wa2, region A:169-232 [Jmol] [rasmolscript] [script source]
        - Domain d1h2wa2, region A:431-710 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wa2_B] [2wa2] [2wa2_A]
  • SWISS-PROT database: [Q8QL64]
  • Domain organization of [Q8QL64_9FLAV] by SWISSPFAM
  • Other resources with information on 2WA2
  • Community annotation for 2WA2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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