2WCP Cell Adhesion date Mar 13, 2009
title Crystal Structure Of Mouse Cadherin-23 Ec1-2
authors M.Sotomayor, W.Weihofen, R.Gaudet, D.P.Corey
compound source
Molecule: Cadherin-23
Chain: A
Fragment: Ec1-2, Residues 24-228
Synonym: Otocadherin
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet21a
symmetry Space Group: H 3 2
R_factor 0.173 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.463 151.463 133.457 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.98 Å
ligand CA, CL, GOL, NA enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural determinants of cadherin-23 function in hearing and deafness., Sotomayor M, Weihofen WA, Gaudet R, Corey DP, Neuron. 2010 Apr 15;66(1):85-100. PMID:20399731
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (2wcp.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 2WCP
  • CSU: Contacts of Structural Units for 2WCP
  • Structure Factors (560 Kb)
  • Retrieve 2WCP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WCP from S2C, [Save to disk]
  • Re-refined 2wcp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2WCP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2WCP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WCP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wcp] [2wcp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2WCP: [CA ] by SMART
    • Other resources with information on 2WCP
  • Community annotation for 2WCP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science