2WEZ Hydrolase date Apr 02, 2009
title Human Bace-1 In Complex With 1-Ethyl-N-((1s,2r)-2-Hydroxy-3- (Methyloxy)Phenyl)Methyl)Amino)-1-(Phenylmethyl)Propyl)-4-( Pyrrolidinyl)-1h-Indole-6-Carboxamide
authors N.Charrier, B.Clarke, L.Cutler, E.Demont, C.Dingwall, R.Dunsdon, J C.Howes, J.Hubbard, I.Hussain, G.Maile, R.Matico, J.Mosley, A.Nay A.O'Brien, S.Redshaw, P.Rowland, V.Soleil, K.J.Smith, S.Sweitzer P.Theobald, D.Vesey, D.S.Walter, G.Wayne
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Residues 61-452
Synonym: Beta-Site Amyloid Precursor Protein Cleaving Enzym Membrane-Associated Aspartic Protease 2, Memapsin-2, Aspart Protease 2, Beta-Site App Cleaving Enzyme 1, Asp 2, Asp2, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell: Ovary
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.223
length a length b length c angle alpha angle beta angle gamma
48.531 76.758 104.430 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand ZYE enzyme Hydrolase E.C. BRENDA

Primary referenceSecond generation of BACE-1 inhibitors. Part 1: The need for improved pharmacokinetics., Charrier N, Clarke B, Cutler L, Demont E, Dingwall C, Dunsdon R, Hawkins J, Howes C, Hubbard J, Hussain I, Maile G, Matico R, Mosley J, Naylor A, O'Brien A, Redshaw S, Rowland P, Soleil V, Smith KJ, Sweitzer S, Theobald P, Vesey D, Walter DS, Wayne G, Bioorg Med Chem Lett. 2009 Apr 17. PMID:19428244
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (2wez.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 2WEZ
  • CSU: Contacts of Structural Units for 2WEZ
  • Likely Quarternary Molecular Structure file(s) for 2WEZ
  • Structure Factors (316 Kb)
  • Retrieve 2WEZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WEZ from S2C, [Save to disk]
  • Re-refined 2wez structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WEZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WEZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WEZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wez_A] [2wez]
  • SWISS-PROT database: [P56817]
  • Belongs to the β-amyloid cleaving enzyme (bace1) family according to TCDB.
  • Domain organization of [BACE1_HUMAN] by SWISSPFAM
  • Other resources with information on 2WEZ
  • Community annotation for 2WEZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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