2WF2 Hydrolase date Apr 02, 2009
title Human Bace-1 In Complex With 8-Ethyl-N-((1s,2r)-2-Hydroxy-3- (Methyloxy)Phenyl)Methyl)Amino)-1-(Phenylmethyl)Propyl)-1-M 7, 8-Tetrahydro-1h,6h-(1,2,5)Thiadiazepino(5,4,3-De)Quinoxa Carboxamide 2,2-Dioxide
authors N.Charrier, B.Clarke, E.Demont, C.Dingwall, R.Dunsdon, J.Hawkins, J.Hubbard, I.Hussain, G.Maile, R.Matico, J.Mosley, A.Naylor, A.O' S.Redshaw, P.Rowland, V.Soleil, K.J.Smith, S.Sweitzer, P.Theobal D.Vesey, D.S.Walter, G.Wayne
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Residues 61-452
Synonym: Beta-Site Amyloid Precursor Protein Cleaving Enzym Membrane-Associated Aspartic Protease 2, Memapsin-2, Aspart Protease 2, Beta-Site App Cleaving Enzyme 1, Asp 2, Asp2, B
Ec: 3.4.23.46
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell: Ovary
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.688 75.915 104.634 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ZY2 enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSecond generation of BACE-1 inhibitors part 2: Optimisation of the non-prime side substituent., Charrier N, Clarke B, Demont E, Dingwall C, Dunsdon R, Hawkins J, Hubbard J, Hussain I, Maile G, Matico R, Mosley J, Naylor A, O'Brien A, Redshaw S, Rowland P, Soleil V, Smith KJ, Sweitzer S, Theobald P, Vesey D, Walter DS, Wayne G, Bioorg Med Chem Lett. 2009 Jul 1;19(13):3669-73. Epub 2009 Apr 5. PMID:19477642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (2wf2.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 2WF2
  • CSU: Contacts of Structural Units for 2WF2
  • Likely Quarternary Molecular Structure file(s) for 2WF2
  • Structure Factors (325 Kb)
  • Retrieve 2WF2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WF2 from S2C, [Save to disk]
  • Re-refined 2wf2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WF2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WF2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WF2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wf2] [2wf2_A]
  • SWISS-PROT database: [P56817]
  • Belongs to the β-amyloid cleaving enzyme (bace1) family according to TCDB.
  • Domain organization of [BACE1_HUMAN] by SWISSPFAM
  • Other resources with information on 2WF2
  • Community annotation for 2WF2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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