2WF4	Hydrolase	date	Apr 02, 2009
title	Human Bace-1 In Complex With 6-Ethyl-1-Methyl-N-((1s)-2-Oxo- (Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-Ylamino)Propyl)-1,3 Tetrahydro(1,2)Thiazepino(5,4,3-Cd)Indole-8-Carboxamide 2,2
authors	N.Charrier, B.Clarke, L.Cutler, E.Demont, C.Dingwall, R.Dunsdon, J C.Howes, J.Hubbard, I.Hussain, G.Maile, R.Matico, J.Mosley, A.Nay A.O'Brien, S.Redshaw, P.Rowland, V.Soleil, K.J.Smith, S.Sweitzer P.Theobald, D.Vesey, D.S.Walter, G.Wayne
compound		source
Molecule: Beta-Secretase 1 Chain: A Fragment: Residues 61-452 Synonym: Bace-1, Beta-Site Amyloid Precursor Protein Cleavi 1, Membrane-Associated Aspartic Protease 2, Memapsin-2, Asp Protease 2, Beta-Site App Cleaving Enzyme 1, Asp 2, Asp2; Ec: 3.4.23.46 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell: Ovary
symmetry	Space Group: P 21 21 21	R_factor 0.192 R_Free 0.224
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.520 76.626 104.737 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	ZY4	enzyme	Hydrolase E.C.3.4.23.46 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Second generation of BACE-1 inhibitors part 3: Towards non hydroxyethylamine transition state mimetics., Charrier N, Clarke B, Cutler L, Demont E, Dingwall C, Dunsdon R, Hawkins J, Howes C, Hubbard J, Hussain I, Maile G, Matico R, Mosley J, Naylor A, O'Brien A, Redshaw S, Rowland P, Soleil V, Smith KJ, Sweitzer S, Theobald P, Vesey D, Walter DS, Wayne G, Bioorg Med Chem Lett. 2009 Apr 5. PMID:19406640

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (2wf4.pdb1.gz) 69 Kb LPC: Ligand-Protein Contacts for 2WF4 CSU: Contacts of Structural Units for 2WF4 Likely Quarternary Molecular Structure file(s) for 2WF4 Structure Factors (290 Kb) Retrieve 2WF4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2WF4 from S2C, [Save to disk] Re-refined 2wf4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2WF4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2WF4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2WF4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2wf4_A] [2wf4] SWISS-PROT database: [P56817] Belongs to the β-amyloid cleaving enzyme (bace1) family according to TCDB. Domain organization of [BACE1_HUMAN] by SWISSPFAM

Other resources with information on 2WF4

Community annotation for 2WF4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---