2WIY Electron Transport date May 18, 2009
title Cytochrome P450 Xpla Heme Domain P21212
authors F.Sabbadin, R.Jackson, N.C.Bruce, G.Grogan
compound source
Molecule: Cytochrome P450-Like Protein Xpla
Chain: A
Fragment: Residues 159-552
Synonym: Xpla-Heme
Engineered: Yes
Organism_scientific: Rhodococcus
Organism_taxid: 1827
Strain: 11y
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2
Expression_system_plasmid: Pet-Ysblic-3c
Other_details: Isolation By Selective Enrichment
symmetry Space Group: P 21 21 2
R_factor 0.147 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.293 64.677 54.048 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.49 Å
ligand EDO, HEM, IMD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe 1.5 A structure of XplA-heme, an unusual cytochrome-P450 heme domain that catalyses reductive biotransformation of royal demolition explosive (RDX)., Sabbadin F, Jackson R, Haider K, Tampi G, Turkenburg JP, Hart S, Bruce NC, Grogan G, J Biol Chem. 2009 Aug 19. PMID:19692330
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (2wiy.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 2WIY
  • CSU: Contacts of Structural Units for 2WIY
  • Structure Factors (530 Kb)
  • Retrieve 2WIY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WIY from S2C, [Save to disk]
  • Re-refined 2wiy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WIY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WIY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WIY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wiy] [2wiy_A]
  • SWISS-PROT database: [Q8GPH7]
  • Domain organization of [Q8GPH7_RHORH] by SWISSPFAM
  • Other resources with information on 2WIY
  • Community annotation for 2WIY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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