2WJ3 Oxidoreductase date May 20, 2009
title Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4- Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter Nitroguajacolicus Ru61a
authors R.A.Steiner
compound source
Molecule: 1-H-3-Hydroxy-4-Oxoquinaldine 2,4-Dioxygenase
Chain: A, B, C, D
Ec: 1.13.11.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Arthrobacter Nitroguajacolicus
Organism_taxid: 211146
Strain: Ru61a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15prep4
Expression_system_vector: Pqe30
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.170 167.860 168.030 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.09 Å
ligand GOL, SRT enzyme Oxidoreductase E.C.1.13.11.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis for cofactor-independent dioxygenation of N-heteroaromatic compounds at the alpha/beta-hydrolase fold., Steiner RA, Janssen HJ, Roversi P, Oakley AJ, Fetzner S, Proc Natl Acad Sci U S A. 2010 Jan 12;107(2):657-62. Epub 2009 Dec 22. PMID:20080731
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (2wj3.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (2wj3.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (2wj3.pdb3.gz) 49 Kb
  • Biological Unit Coordinates (2wj3.pdb4.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 2WJ3
  • CSU: Contacts of Structural Units for 2WJ3
  • Structure Factors (964 Kb)
  • Retrieve 2WJ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WJ3 from S2C, [Save to disk]
  • Re-refined 2wj3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WJ3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WJ3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wj3_C] [2wj3_A] [2wj3] [2wj3_D] [2wj3_B]
  • SWISS-PROT database: [A4V8M9]
  • Domain organization of [A4V8M9_9MICC] by SWISSPFAM
  • Other resources with information on 2WJ3
  • Community annotation for 2WJ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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