OCA Atlas for 2WJ7

2WJ7

Chaperone

date

May 22, 2009

title

Human Alphab Crystallin

authors

C.E.Naylor, C.Bagneris, O.A.Bateman, N.Cronin, N.H.Keep, C.Slings

compound

source

Molecule: Alpha-Crystallin B Chain
Chain: A, B, C, D, E
Fragment: Alpha-Crystallin Domain, Residues 67-157
Synonym: Alpha(B)-Crystallin, Rosenthal Fiber Component, He Protein Beta-5, Hspb5, Renal Carcinoma Antigen Ny-Ren-27, H Alphab;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

symmetry

Space Group: C 1 2 1

R_factor

0.252

R_Free

0.320

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
49.460	66.070	190.970	90.00	92.68	90.00

method

X-Ray Diffraction

resolution

2.63 Å

note

2WJ7 (Molecule of the Month:pdb127)

Primary reference

Crystal Structures of alpha-Crystallin Domain Dimers of alphaB-Crystallin and Hsp20., Bagneris C, Bateman OA, Naylor CE, Cronin N, Boelens WC, Keep NH, Slingsby C, J Mol Biol. 2009 Jul 30. PMID:19646995

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]

Biological Unit Coordinates (2wj7.pdb1.gz) 15 Kb

Biological Unit Coordinates (2wj7.pdb2.gz) 13 Kb

Biological Unit Coordinates (2wj7.pdb3.gz) 15 Kb

Biological Unit Coordinates (2wj7.pdb4.gz) 12 Kb

Biological Unit Coordinates (2wj7.pdb5.gz) 13 Kb

CSU: Contacts of Structural Units for 2WJ7

Structure Factors (131 Kb)

Retrieve 2WJ7 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2WJ7 from S2C, [Save to disk]

Re-refined 2wj7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2WJ7 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2WJ7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2WJ7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2wj7_A] [2wj7_C] [2wj7_B] [2wj7_D] [2wj7_E] [2wj7]

SWISS-PROT database: [P02511]

Domain organization of [CRYAB_HUMAN] by SWISSPFAM

Other resources with information on 2WJ7

Community annotation for 2WJ7 at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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