2WV4 Hydrolase Peptide date Oct 13, 2009
title Crystal Structure Of Foot-And-Mouth Disease Virus 3c Proteas Complex With A Decameric Peptide Corresponding To The Vp1-2 Junction
authors P.A.Zunszain, S.R.Knox, T.R.Sweeney, J.Yang, N.Roque-Rosell, G.J. R.J.Leatherbarrow, S.Curry
compound source
Molecule: Picornain 3c
Chain: A, B
Synonym: Foot-And-Mouth Disease Virus 3c Protease, Protease Protease P20b;
Ec: 3.4.22.28
Engineered: Yes
Mutation: Yes
Organism_scientific: Foot-And-Mouth Disease Virus
Organism_taxid: 12112
Strain: A10-61
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Petmll-G3cpro(1-207)

Molecule: Foot And Mouth Disease Virus (Serotype A) Variant Capsid Protein;
Chain: C, D
Fragment: Vp1-2a Cleavage Junction (P5-P5'), Residues 29-38
Engineered: Yes

Synthetic: Yes
Organism_scientific: Foot-And-Mouth Disease Virus
Organism_taxid: 12112
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.760 75.250 85.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ACE enzyme Hydrolase E.C.3.4.22.28 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInsights into Cleavage Specificity from the Crystal Structure of Foot-and-Mouth Disease Virus 3C Protease Complexed with a Peptide Substrate., Zunszain PA, Knox SR, Sweeney TR, Yang J, Roque-Rosell N, Belsham GJ, Leatherbarrow RJ, Curry S, J Mol Biol. 2009 Oct 31. PMID:19883658
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (2wv4.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (2wv4.pdb2.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 2WV4
  • CSU: Contacts of Structural Units for 2WV4
  • Structure Factors (102 Kb)
  • Retrieve 2WV4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WV4 from S2C, [Save to disk]
  • Re-refined 2wv4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WV4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WV4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WV4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wv4_B] [2wv4_C] [2wv4_A] [2wv4_D] [2wv4]
  • SWISS-PROT database: [P03306]
  • Domain organization of [POLG_FMDV1] by SWISSPFAM
  • Other resources with information on 2WV4
  • Community annotation for 2WV4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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