2WWF	Transferase	date	Oct 23, 2009
title	Plasmodium Falciparum Thymidylate Kinase In Complex With Tmp
authors	J.L.Whittingham, J.Carrero-Lerida, J.A.Brannigan, L.M.Ruiz-Pere A.P.G.Silva, M.J.Fogg, A.J.Wilkinson, I.H.Gilbert, K.S.Wilson, D.Gonzalez-Pacanowska
compound		source
Molecule: Thymidilate Kinase, Putative Chain: A, B, C Ec: 2.7.4.9 Engineered: Yes		Organism_scientific: Plasmodium Falciparum Organism_taxid: 36329 Strain: 3d7 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: P 31 2 1	R_factor 0.160 R_Free 0.203
crystal cell	length a length b length c angle alpha angle beta angle gamma 110.127 110.127 120.097 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.89 Å
ligand	ADP, GOL, NA, TMP	enzyme	Transferase E.C.2.7.4.9 BRENDA
Gene Ontology	Chain Function Process Component A, C, B nucleoside diphosphate kinas... thymidylate kinase activity uridylate kinase activity
Primary reference	Structural basis for the efficient phosphorylation of AZTMP and dGMP by Plasmodium falciparum type I thymidylate kinase., Whittingham JL, Carrero-Lerida J, Brannigan JA, Ruiz-Perez LM, Silva AP, Fogg MJ, Wilkinson AJ, Gilbert IH, Wilson KS, Gonzalez-Pacanowska D, Biochem J. 2010 Mar 30. PMID:20353400

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk] Biological Unit Coordinates (2wwf.pdb1.gz) 82 Kb Biological Unit Coordinates (2wwf.pdb2.gz) 79 Kb LPC: Ligand-Protein Contacts for 2WWF CSU: Contacts of Structural Units for 2WWF Structure Factors (438 Kb) Retrieve 2WWF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2WWF from S2C, [Save to disk] Re-refined 2wwf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2WWF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2WWF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2WWF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2wwf] [2wwf_C] [2wwf_B] [2wwf_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 2WWF

Community annotation for 2WWF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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