2X35 Transcription date Jan 21, 2010
title Molecular Basis Of Histone H3k36me3 Recognition By The Pwwp Brpf1.
authors A.Vezzoli, N.Bonadies, M.D.Allen, S.M.V.Freund, C.M.Santiveri, B. B.J.P.Huntly, B.Gottgens, M.Bycroft
compound source
Molecule: Peregrin
Chain: A
Fragment: Brpf1 Pwwp Domain, Residues 1076-1205
Synonym: Bromodomain And Phd Finger-Containing Protein 1, P Br140;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_vector: Prseta
symmetry Space Group: C 2 2 21
R_factor 0.198 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.214 62.399 114.958 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Primary referenceMolecular basis of histone H3K36me3 recognition by the PWWP domain of Brpf1., Vezzoli A, Bonadies N, Allen MD, Freund SM, Santiveri CM, Kvinlaug BT, Huntly BJ, Gottgens B, Bycroft M, Nat Struct Mol Biol. 2010 Apr 18. PMID:20400950
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (2x35.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 2X35
  • Structure Factors (77 Kb)
  • Retrieve 2X35 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X35 from S2C, [Save to disk]
  • Re-refined 2x35 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2X35 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2X35
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X35, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x35_A] [2x35]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2X35: [PWWP ] by SMART
    • Other resources with information on 2X35
  • Community annotation for 2X35 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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