2X39	Transferase	date	Jan 22, 2010
title	Structure Of 4-Amino-N-(4-Chlorobenzyl)-1-(7h-Pyrrolo(2,3-D) Pyrimidin-4-Yl)Piperidine-4-Carboxamide Bound To Pkb
authors	T.G.Davies, T.Mchardy, J.J.Caldwell, K.M.Cheung, L.J.Hunter, K.Taylor, M.Rowlands, R.Ruddle, A.Henley, A.D.Brandon, M.Valenti, L.Fazal, L.Seavers, F.I.Raynaud, S.A.Eccles, G.W.Aherne, M.D.Garrett, I.Collins
compound		source
Molecule: Rac-Beta Serinethreonine-Protein Kinase Chain: A Fragment: Kinase Catalytic Domain, Residues 146-467 Synonym: Rac-Pk-Beta, Protein Kinase Akt-2, Protein Kinase B\,Beta, Pkb Beta; Ec: 2.7.11.1 Engineered: Yes Other_details: Piftide Sequence (Eeqemfedfdyiadw) Replaces Natural Pkb Sequence After Residue 464c;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
Molecule: Glycogen Synthase Kinase-3 Beta Chain: C Fragment: Residues 3-12 Synonym: Gsk-3 Beta, Gsk-3 Beta Ec: 2.7.11.26 Other_details: Peptide Derived From The Kinase Gsk3-Beta		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.166 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.273 60.518 132.592 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.93 Å
ligand	TPO, X39 BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of 4-Amino-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidine-4-carboxamides As Selective, Orally Active Inhibitors of Protein Kinase B (Akt)., McHardy T, Caldwell JJ, Cheung KM, Hunter LJ, Taylor K, Rowlands M, Ruddle R, Henley A, de Haven Brandon A, Valenti M, Davies TG, Fazal L, Seavers L, Raynaud FI, Eccles SA, Aherne GW, Garrett MD, Collins I, J Med Chem. 2010 Feb 12. PMID:20151677

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (2x39.pdb1.gz) 61 Kb LPC: Ligand-Protein Contacts for 2X39 CSU: Contacts of Structural Units for 2X39 Structure Factors (473 Kb) Retrieve 2X39 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2X39 from S2C, [Save to disk] Re-refined 2x39 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2X39 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2X39

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2X39, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2x39_A] [2x39] [2x39_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 2X39: [S_TK_X] [S_TKc ] by SMART

Other resources with information on 2X39

Community annotation for 2X39 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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