OCA Atlas for 2X53

2X53

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Gene
Ontology

Chain	Function	Process	Component
K, D, F, J, E, O, N, P, I, C, H, B, G, Q, L, R, M, A
S, X, T, W, U, V

Primary reference

Structure of lactococcal phage p2 baseplate and its mechanism of activation., Sciara G, Bebeacua C, Bron P, Tremblay D, Ortiz-Lombardia M, Lichiere J, van Heel M, Campanacci V, Moineau S, Cambillau C, Proc Natl Acad Sci U S A. 2010 Mar 29. PMID:20351260

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1203 Kb) [Save to disk]

Biological Unit Coordinates (2x53.pdb1.gz) 2368 Kb

LPC: Ligand-Protein Contacts for 2X53

CSU: Contacts of Structural Units for 2X53

Structure Factors (1856 Kb)

Retrieve 2X53 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2X53 from S2C, [Save to disk]

Re-refined 2x53 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2X53 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2x53_I] [2x53_H] [2x53_J] [2x53_K] [2x53_L] [2x53_M] [2x53_N] [2x53_O] [2x53_P] [2x53_Q] [2x53_R] [2x53_S] [2x53_T] [2x53_U] [2x53_V] [2x53_W] [2x53_X] [2x53_Y] [2x53_Z] [2x53] [2x53_1] [2x53_A] [2x53_B] [2x53_C] [2x53_D] [2x53_E] [2x53_F] [2x53_G]

SWISS-PROT database: [D3KFX5] [D3KFX6] [Q1RNF7]

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