2X5H Viral Protein date Feb 08, 2010
title Crystal Structure Of The Orf131 L26m L51m Double Mutant From Sulfolobus Islandicus Rudivirus 1
authors M.Oke, L.G.Carter, K.A.Johnson, H.Liu, S.A.Mcmahon, J.H.Naismith,
compound source
Molecule: Orf 131
Chain: A, B, C, D
Fragment: Truncated Version, Residues 1-96
Synonym: Uncharacterized Protein 131, Cag38830
Engineered: Yes
Mutation: Yes
 Organism_scientific: Sulfolobus Islandicus Rudivirus 1
Organism_taxid: 282066
Variant: Xx
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_variant: Bl21
Expression_system_plasmid: Pdest14
symmetry Space Group: P 1
R_factor 0.200 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.940 46.971 48.976 90.22 95.05 91.78
method X-Ray Diffractionresolution 1.80 Å
ligand SO4 enzyme
Primary referenceThe Scottish Structural Proteomics Facility: targets, methods and outputs., Oke M, Carter LG, Johnson KA, Liu H, McMahon SA, Yan X, Kerou M, Weikart ND, Kadi N, Sheikh MA, Schmelz S, Dorward M, Zawadzki M, Cozens C, Falconer H, Powers H, Overton IM, van Niekerk CA, Peng X, Patel P, Garrett RA, Prangishvili D, Botting CH, Coote PJ, Dryden DT, Barton GJ, Schwarz-Linek U, Challis GL, Taylor GL, White MF, Naismith JH, J Struct Funct Genomics. 2010 Jun;11(2):167-80. Epub 2010 Apr 24. PMID:20419351
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (2x5h.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (2x5h.pdb2.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 2X5H
  • CSU: Contacts of Structural Units for 2X5H
  • Structure Factors (199 Kb)
  • Retrieve 2X5H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X5H from S2C, [Save to disk]
  • Re-refined 2x5h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2X5H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2X5H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X5H, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x5h_A] [2x5h] [2x5h_C] [2x5h_B] [2x5h_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2X5H
  • Community annotation for 2X5H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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