2X6N Viral Protein date Feb 18, 2010
title Human Foamy Virus Integrase - Catalytic Core. Manganese-Boun Structure.
authors S.Rety, O.Delelis, L.Rezabkova, B.Dubanchet, J.Silhan, A.Lewit-Be
compound source
Molecule: Integrase
Chain: A, B, C, D, E, F
Fragment: Catalytic Core, Residues 861-1060
Synonym: In, P42in
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Spumaretrovirus
Organism_taxid: 11963
Strain: Hsrv2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet-15b
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.767 89.232 177.084 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.06 Å
ligand MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructural studies of the catalytic core of the primate foamy virus (PFV-1) integrase., Rety S, Reaeabkova L, Dubanchet B, Silhan J, Legrand P, Lewit-Bentley A, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Aug 1;66(Pt, 8):881-6. Epub 2010 Jul 27. PMID:20693659
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (2x6n.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (2x6n.pdb2.gz) 60 Kb
  • Biological Unit Coordinates (2x6n.pdb3.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 2X6N
  • CSU: Contacts of Structural Units for 2X6N
  • Structure Factors (3398 Kb)
  • Retrieve 2X6N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X6N from S2C, [Save to disk]
  • Re-refined 2x6n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X6N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X6N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X6N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x6n_B] [2x6n_C] [2x6n_A] [2x6n] [2x6n_E] [2x6n_F] [2x6n_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2X6N
  • Community annotation for 2X6N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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