2X7N Ribosomal Protein Rna date Mar 02, 2010
title Mechanism Of Eif6s Anti-Association Activity
authors M.Gartmann, M.Blau, J.P.Armache, T.Mielke, M.Topf, R.Beckmann
compound source
Molecule: Sarcin-Ricin Loop
Chain: A
Fragment: 2684-2711
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Eukaryotic Translation Initiation Factor 6
Chain: B
Fragment: Residues 1-224
Synonym: Eif-6

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: 60s Ribosomal Protein L23
Chain: C
Fragment: Residues 6-137
Synonym: Yl32, L17a

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: 60s Ribosomal Protein L24-A
Chain: D
Fragment: Residues 1-56
Synonym: L30, Yl221, Rp29

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 11.80 Å
Gene
Ontology
ChainFunctionProcessComponent
B


C

  • cytosolic large ribosomal su...
  • Primary referenceMechanism of eIF6-mediated inhibition of ribosomal subunit joining., Gartmann M, Blau M, Armache JP, Mielke T, Topf M, Beckmann R, J Biol Chem. 2010 Mar 31. PMID:20356839
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (2x7n.pdb1.gz) 73 Kb
  • CSU: Contacts of Structural Units for 2X7N
  • Retrieve 2X7N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X7N from S2C, [Save to disk]
  • View 2X7N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X7N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2X7N, from MSDmotif at EBI
  • Fold representative 2x7n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x7n_A] [2x7n] [2x7n_D] [2x7n_C] [2x7n_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2X7N: [Ribosomal_L14] [eIF6 ] by SMART
  • Other resources with information on 2X7N
  • Community annotation for 2X7N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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