OCA Atlas for 2X89

2X89

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
D, F, E, G		cellular response to iron io...

Primary reference

Atomic structure of a nanobody-trapped domain-swapped dimer of an amyloidogenic {beta}2-microglobulin variant., Domanska K, Vanderhaegen S, Srinivasan V, Pardon E, Dupeux F, Marquez JA, Giorgetti S, Stoppini M, Wyns L, Bellotti V, Steyaert J, Proc Natl Acad Sci U S A. 2011 Jan 10. PMID:21220305

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]

Biological Unit Coordinates (2x89.pdb1.gz) 33 Kb

Biological Unit Coordinates (2x89.pdb2.gz) 33 Kb

Biological Unit Coordinates (2x89.pdb3.gz) 23 Kb

Biological Unit Coordinates (2x89.pdb4.gz) 23 Kb

Biological Unit Coordinates (2x89.pdb5.gz) 22 Kb

CSU: Contacts of Structural Units for 2X89

Structure Factors (874 Kb)

Retrieve 2X89 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2X89 from S2C, [Save to disk]

Re-refined 2x89 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2X89 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2x89] [2x89_A] [2x89_B] [2x89_C] [2x89_D] [2x89_E] [2x89_F] [2x89_G]

SWISS-PROT database:

Domains found in 2X89: [IGc1] [IGv ] by SMART

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