2X9V Oxidoreductase date Mar 24, 2010
title High Resolution Structure Of Tbptr1 With Trimetrexate
authors A.Dawson, L.B.Tulloch, K.L.Barrack, W.N.Hunter
compound source
Molecule: Pteridine Reductase
Chain: A, B, C, D
Synonym: Ptr1
Ec: 1.5.1.33
Engineered: Yes
Organism_scientific: Trypanosoma Brucei Brucei
Organism_taxid: 5702
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b_tbptr1
symmetry Space Group: P 1 21 1
R_factor 0.12125 R_Free 0.14784
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.560 90.710 82.460 90.00 115.69 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand ACT, NAP, TMQ enzyme Oxidoreductase E.C.1.5.1.33 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceHigh-resolution structures of Trypanosoma brucei pteridine reductase ligand complexes inform on the placement of new molecular entities in the active site of a potential drug target., Dawson A, Tulloch LB, Barrack KL, Hunter WN, Acta Crystallogr D Biol Crystallogr. 2010 Dec;66(Pt 12):1334-40. Epub 2010, Nov 16. PMID:21123874
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (374 Kb) [Save to disk]
  • Biological Unit Coordinates (2x9v.pdb1.gz) 366 Kb
  • LPC: Ligand-Protein Contacts for 2X9V
  • CSU: Contacts of Structural Units for 2X9V
  • Structure Factors (3193 Kb)
  • Retrieve 2X9V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X9V from S2C, [Save to disk]
  • Re-refined 2x9v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X9V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X9V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X9V, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x9v_C] [2x9v] [2x9v_D] [2x9v_B] [2x9v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2X9V
  • Community annotation for 2X9V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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