2XAQ	Transcription	date	Mar 31, 2010
title	Crystal Structure Of Lsd1-Corest In Complex With A Tranylcypromine Derivative (Mc2584, 13b)
authors	C.Binda, S.Valente, M.Romanenghi, S.Pilotto, R.Cirilli, A.Karytinos, G.Ciossani, O.A.Botrugno, F.Forneris, M.Tardugno, D.E.Edmondson, S.Minucci, A.Mattevi, A.Mai
compound		source
Molecule: Lysine-Specific Histone Demethylase 1 Chain: A Synonym: Lysine-Specific Histone Demethylase Lsd1, Flavin-Containing Amine Oxidase Domain-Containing Protein 2, Braf35-Hdac Complex Protein Bhc110; Ec: 1.-.-.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rest Corepressor 1 Chain: B Synonym: Corepressor Corest, Protein Corest Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: I 2 2 2	R_factor 0.24280 R_Free 0.26380
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.102 180.346 235.928 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	FAD, M84	enzyme	Oxidoreductase E.C.1 BRENDA
Gene Ontology	Chain Function Process Component A negative regulation of DNA b... B
Primary reference	Biochemical, Structural, and Biological Evaluation of Tranylcypromine Derivatives as Inhibitors of Histone Demethylases LSD1 and LSD2., Binda C, Valente S, Romanenghi M, Pilotto S, Cirilli R, Karytinos A, Ciossani G, Botrugno OA, Forneris F, Tardugno M, Edmondson DE, Minucci S, Mattevi A, Mai A, J Am Chem Soc. 2010 Apr 23. PMID:20415477

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk] Biological Unit Coordinates (2xaq.pdb1.gz) 131 Kb LPC: Ligand-Protein Contacts for 2XAQ CSU: Contacts of Structural Units for 2XAQ Structure Factors (607 Kb) Retrieve 2XAQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2XAQ from S2C, [Save to disk] Re-refined 2xaq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2XAQ in 3D

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Visual 3D analysis of 2XAQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2XAQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2xaq] [2xaq_B] [2xaq_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 2XAQ: [ELM2] [SANT ] by SMART

Other resources with information on 2XAQ

Community annotation for 2XAQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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