2XB2 | Hydrolase | date | Apr 03, 2010 |
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title | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-Upf Assembly Shows How The Ejc Is Bridged To The Nmd Machinery | ||||||||||||||||||||||||||
authors | G.Buchwald, J.Ebert, C.Basquin, J.Sauliere, U.Jayachandran, F.Bon Hir, E.Conti | ||||||||||||||||||||||||||
compound | source | ||||||||||||||||||||||||||
Molecule: Eukaryotic Initiation Factor 4a-III Chain: A, X Synonym: Eif4aiii, Eukaryotic Translation Initiation Factor Isoform 3, Atp-Dependent Rna Helicase Eif4a-3, Atp-Dependen Helicase Ddx48, Dead Box Protein 48, Eukaryotic Initiation Like Nuk-34, Nuclear Matrix Protein 265, Nmp 265; Ec: 3.6.1.- Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Petmcn | ||||||||||||||||||||||||||
Molecule: Protein Mago Nashi Homolog Chain: C, Y Synonym: Mago Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Petmcn | ||||||||||||||||||||||||||
Molecule: Rna-Binding Protein 8a Chain: D, Z Fragment: Rrm, Residues 66-155 Synonym: Rna-Binding Motif Protein 8a, Y14, Ribonucleoprote Rna-Binding Protein Y14, Binder Of Ovca1-1, Bov-1; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Petmcn | ||||||||||||||||||||||||||
Molecule: Rna Poly-U-Ribonucleotide Chain: E, R Engineered: Yes Other_details: 15 Poly-U Synthetic Construct |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||||||||||||||
Molecule: Putative Regulator Of Nonsense Transcripts 3b Chain: F Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Pec | ||||||||||||||||||||||||||
Molecule: Regulator Of Nonsense Transcripts 3b Chain: G, U Fragment: C-Terminal Ejc Binding Region, Residues 411-470 Synonym: Upf3b, Nonsense Mrna Reducing Factor 3b, Up-Frames Suppressor 3 Homolog B, Up-Frameshift Suppressor 3 Homolog Chromosome X, Hupf3p-X; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Pec | ||||||||||||||||||||||||||
Molecule: Protein Casc3 Chain: S, T Fragment: Selor Domain, Residues 137-286 Synonym: Barentsz, Cancer Susceptibility Candidate Gene 3 P Metastatic Lymph Node Gene 51 Protein, Mln 51, Btz; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Petmcn | ||||||||||||||||||||||||||
symmetry | Space Group: P 41 21 2 |
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crystal cell |
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method | X-Ray Diffraction | resolution | 3.40 Å | ||||||||||||||||||||||||
ligand | ANP, MG | enzyme | Hydrolase E.C.3.6.1 BRENDA | ||||||||||||||||||||||||
Gene Ontology |
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Primary reference | Insights into the recruitment of the NMD machinery from the crystal structure of a core EJC-UPF3b complex., Buchwald G, Ebert J, Basquin C, Sauliere J, Jayachandran U, Bono F, Le Hir H, Conti E, Proc Natl Acad Sci U S A. 2010 May 17. PMID:20479275 |
Data retrieval |
View 2XB2 in 3D |
Visual 3D analysis of 2XB2 |
Structure-derived information |
- Domain d1q2xb2, region B:134-357 [Jmol] [rasmolscript] [script source] - Domain d1w2xb2, region B:1815-2189 [Jmol] [rasmolscript] [script source] - Domain d1n2xb2, region B:8-114,B:216-292 [Jmol] [rasmolscript] [script source] |
Sequence-derived information |
Other resources with information on 2XB2 |
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OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |