2XDM		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	BO8, CO, MES, SO4	enzyme
Gene Ontology	Chain Function Process Component A, C, B, D
Primary reference	Crystal Structure of a Complex between the Actinomadura R39 dd-Peptidase and a Peptidoglycan-mimetic Boronate Inhibitor: Interpretation of a Transition State Analogue in Terms of Catalytic Mechanism., Dzhekieva L, Rocaboy M, Kerff F, Charlier P, Sauvage E, Pratt RF, Biochemistry. 2010 Jul 7. PMID:20608745

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (562 Kb) [Save to disk] Biological Unit Coordinates (2xdm.pdb1.gz) 142 Kb Biological Unit Coordinates (2xdm.pdb2.gz) 141 Kb Biological Unit Coordinates (2xdm.pdb3.gz) 142 Kb Biological Unit Coordinates (2xdm.pdb4.gz) 143 Kb LPC: Ligand-Protein Contacts for 2XDM CSU: Contacts of Structural Units for 2XDM Structure Factors (1331 Kb) Retrieve 2XDM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2XDM from S2C, [Save to disk] Re-refined 2xdm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2XDM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2xdm] [2xdm_A] [2xdm_B] [2xdm_C] [2xdm_D] SWISS-PROT database:

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