2XFD Sugar Binding Protein date May 21, 2010
title Vcbm60 In Complex With Cellobiose
authors C.Montanier, J.E.Flint, D.N.Bolam, H.Xie, Z.Liu, A.Rogowski, D.P.W D.Nurizzo, S.M.Roberts, J.P.Turkenburg, G.J.Davies, H.J.Gilbert
compound source
Molecule: Carbohydrate Binding Module
Chain: A
Synonym: Vcbm60
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Other_details: Environmental Isolate
symmetry Space Group: P 21 21 21
R_factor 0.117 R_Free 0.148
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.610 41.990 80.080 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.19 Å
ligand BGC, CA, GOL enzyme
note 2XFD is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCircular permutation provides an evolutionary link between two families of calcium-dependent carbohydrate binding modules., Montanier C, Flint JE, Bolam DN, Xie H, Liu Z, Rogowski A, Weiner D, Ratnaparkhe S, Nurizzo D, Roberts SM, Turkenburg JP, Davies GJ, Gilbert HJ, J Biol Chem. 2010 Jul 21. PMID:20659893
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (2xfd.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 2XFD
  • CSU: Contacts of Structural Units for 2XFD
  • Structure Factors (407 Kb)
  • Retrieve 2XFD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XFD from S2C, [Save to disk]
  • Re-refined 2xfd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2XFD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2XFD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XFD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xfd_A] [2xfd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2XFD
  • Community annotation for 2XFD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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