2XGY	Viral Protein Isomerase	date	Jun 08, 2010
title	Complex Of Rabbit Endogenous Lentivirus (Relik)Capsid With Cyclophilin A
authors	D.C.Goldstone, L.E.Robertson, L.F.Haire, J.P.Stoye, I.A.Taylor
compound		source
Molecule: Relik Capsid N-Terminal Domain Chain: A Engineered: Yes		Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet22b Other_details: Synthesised Reconstructed Gene
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase A Chain: B Synonym: Ppiase A, Rotamase A, Cyclophilin A, Cyclosporin A Protein; Ec: 5.2.1.8 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pgex-6p1
symmetry	Space Group: P 61	R_factor 0.1558 R_Free 0.1874
crystal cell	length a length b length c angle alpha angle beta angle gamma 117.158 117.158 49.655 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	GOL	enzyme	Isomerase E.C.5.2.1.8 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural and functional analysis of prehistoric lentiviruses uncovers an ancient molecular interface., Goldstone DC, Yap MW, Robertson LE, Haire LF, Taylor WR, Katzourakis A, Stoye JP, Taylor IA, Cell Host Microbe. 2010 Sep 16;8(3):248-59. PMID:20833376

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (2xgy.pdb1.gz) 101 Kb LPC: Ligand-Protein Contacts for 2XGY CSU: Contacts of Structural Units for 2XGY Structure Factors (543 Kb) Retrieve 2XGY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2XGY from S2C, [Save to disk] Re-refined 2xgy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2XGY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2XGY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2XGY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2xgy_A] [2xgy] [2xgy_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 2XGY

Community annotation for 2XGY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---