2XOL Chaperone date Aug 18, 2010
title High Resolution Structure Of Ttrd From Archaeoglobus Fulgidu
authors A.Dawson, S.J.Coulthurst, F.Sargent, W.N.Hunter
compound source
Molecule: Chaperone Protein Ttrd
Chain: A, B
Engineered: Yes
Organism_scientific: Archaeoglobus Fulgidus
Organism_taxid: 2234
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15btev_ttrd
symmetry Space Group: P 1 21 1
R_factor 0.151 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.763 52.537 64.947 90.00 91.26 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand EDO enzyme
note 2XOL is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceConserved Signal Peptide Recognition Systems across the Prokaryotic Domains., Coulthurst SJ, Dawson A, Hunter WN, Sargent F, Biochemistry. 2012 Feb 13. PMID:22289056
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (2xol.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 2XOL
  • CSU: Contacts of Structural Units for 2XOL
  • Structure Factors (4615 Kb)
  • Retrieve 2XOL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XOL from S2C, [Save to disk]
  • Re-refined 2xol structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XOL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XOL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XOL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xol_B] [2xol] [2xol_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XOL
  • Community annotation for 2XOL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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