2XPC Ligase date Aug 26, 2010
title Second-Generation Sulfonamide Inhibitors Of Murd: Activity Optimisation With Conformationally Rigid Analogues Of D-Glu
authors I.Sosic, H.Barreteau, M.Simcic, R.Sink, J.Cesar, S.Golic-Grdadoln C.Contreras-Martel, A.Dessen, A.Amoroso, B.Joris, D.Blanot, S.Go
compound source
Molecule: Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase
Chain: A
Synonym: Udp-N-Acetylmuramoyl-L-Alanyl-D-Glutamate Syntheta Glutamic Acid-Adding Enzyme, Murd Ligase;
Ec: 6.3.2.9
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Cell_line: Dh5a
Expression_system: Escherichia Coli Dh5[Alpha]
Expression_system_taxid: 668369
Expression_system_plasmid: Pabd16murd
symmetry Space Group: P 41
R_factor 0.174 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.659 65.659 135.642 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.49 Å
ligand 051, CL, DMS, KCX, SO4 enzyme Ligase E.C.6.3.2.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSecond-generation sulfonamide inhibitors of d-glutamic acid-adding enzyme: Activity optimisation with conformationally rigid analogues of d-glutamic acid., Sosic I, Barreteau H, Simcic M, Sink R, Cesar J, Zega A, Grdadolnik SG, Contreras-Martel C, Dessen A, Amoroso A, Joris B, Blanot D, Gobec S, Eur J Med Chem. 2011 Apr 9. PMID:21524830
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (2xpc.pdb1.gz) 154 Kb
  • LPC: Ligand-Protein Contacts for 2XPC
  • CSU: Contacts of Structural Units for 2XPC
  • Structure Factors (633 Kb)
  • Retrieve 2XPC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XPC from S2C, [Save to disk]
  • Re-refined 2xpc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2XPC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2XPC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XPC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xpc_A] [2xpc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2XPC
  • Community annotation for 2XPC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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