2XSW Hydrolase date Sep 30, 2010
title Crystal Structure Of Human Inpp5e
authors L.Tresaugues, P.Schutz, C.H.Arrowsmith, H.Berglund, C.Bountra, R. A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, I.Jo T.Karlberg, S.Kol, T.Kotenyova, E.Kouznetsova, M.Moche, T.Nyman, C.Persson, H.Schuler, P.Schutz, M.I.Siponen, A.G.Thorsell, S.Van Berg, E.Wahlberg, J.Weigelt, M.Welin, P.Nordlund
compound source
Molecule: 72 Kda Inositol Polyphosphate 5-Phosphatase
Chain: A, B
Fragment: Phosphatase Domain, Residues 275-623
Synonym: Phosphatidylinositol-4\,5-Bisphosphate 5-Phosphata Phosphatidylinositol Polyphosphate 5-Phosphatase Type Iv;
Ec: 3.1.3.36
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Ch2
Other_details: Mammalian Gene Collection (Mgc)
symmetry Space Group: P 21 21 21
R_factor 0.165 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.528 103.579 137.545 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL, GOL enzyme Hydrolase E.C.3.1.3.36 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (233 Kb) [Save to disk]
  • Biological Unit Coordinates (2xsw.pdb1.gz) 118 Kb
  • Biological Unit Coordinates (2xsw.pdb2.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 2XSW
  • CSU: Contacts of Structural Units for 2XSW
  • Structure Factors (1312 Kb)
  • Retrieve 2XSW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XSW from S2C, [Save to disk]
  • Re-refined 2xsw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XSW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XSW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XSW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xsw] [2xsw_A] [2xsw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XSW: [IPPc ] by SMART
  • Other resources with information on 2XSW
  • Community annotation for 2XSW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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