OCA Atlas for 2XTJ

2XTJ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

A proprotein convertase subtilisin-like/kexin type 9 (PCSK9)-binding antibody that structurally mimics the EGF(A) domain of LDL-receptor reduces free circulating PCSK9 and LDL-cholesterol., Ni YG, Di Marco S, Condra JH, Peterson LB, Wang W, Wang F, Pandit S, Hammond HA, Rosa R, Cummings RT, Wood DD, Liu X, Bottomley MJ, Shen X, Cubbon RM, Wang SP, Johns DG, Volpari C, Hamuro L, Chin J, Huang L, Zhao JZ, Vitelli S, Haytko P, Wisniewski D, Mitnaul LJ, Sparrow CP, Hubbard B, Carfi A, Sitlani A, J Lipid Res. 2010 Oct 19. PMID:20959675

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]

Biological Unit Coordinates (2xtj.pdb1.gz) 122 Kb

LPC: Ligand-Protein Contacts for 2XTJ

CSU: Contacts of Structural Units for 2XTJ

Structure Factors (1699 Kb)

Retrieve 2XTJ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2XTJ from S2C, [Save to disk]

Re-refined 2xtj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2XTJ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2xtj] [2xtj_A] [2xtj_B] [2xtj_C] [2xtj_D] [2xtj_E] [2xtj_P]

SWISS-PROT database:

Domains found in 2XTJ: [IGc1] [IGv ] by SMART

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