2Y00 Receptor date Nov 30, 2010
title Turkey Beta1 Adrenergic Receptor With Stabilising Mutations Partial Agonist Dobutamine (Crystal Dob92)
authors A.Warne, R.Moukhametzianov, J.G.Baker, R.Nehme, P.C.Edwards, A.G. G.F.X.Schertler, C.G.Tate
compound source
Molecule: Beta-1 Adrenergic Receptor
Chain: A, B
Fragment: Residues 33-368
Synonym: Beta-1 Adrenoreceptor, Beta-1 Adrenoceptor, Beta-T
Engineered: Yes
Mutation: Yes
Other_details: Residues 3-32 At The N-Terminus And Residues Of The Third Intracellular Loop Were Deleted From The Const Construct Was Truncated After Residue 367 And A Hexahis Tag
Organism_scientific: Meleagris Gallopavo
Organism_common: Turkey
Organism_taxid: 9103
Cell: Erythrocyte
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pbacpak8
symmetry Space Group: P 1 21 1
R_factor 0.226 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.000 60.500 101.900 90.00 110.20 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 2CV, NA, Y00, Y01 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structural basis for agonist and partial agonist action on a beta(1)-adrenergic receptor., Warne T, Moukhametzianov R, Baker JG, Nehme R, Edwards PC, Leslie AG, Schertler GF, Tate CG, Nature. 2011 Jan 13;469(7329):241-4. PMID:21228877
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (2y00.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (2y00.pdb2.gz) 54 Kb
  • Biological Unit Coordinates (2y00.pdb3.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 2Y00
  • CSU: Contacts of Structural Units for 2Y00
  • Structure Factors (260 Kb)
  • Retrieve 2Y00 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y00 from S2C, [Save to disk]
  • Re-refined 2y00 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y00 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y00
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Y00, from MSDmotif at EBI
  • Fold representative 2y00 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y00_A] [2y00] [2y00_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2Y00
  • Community annotation for 2Y00 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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