2Y02 Receptor date Nov 30, 2010
title Turkey Beta1 Adrenergic Receptor With Stabilising Mutations Agonist Carmoterol
authors A.Warne, R.Moukhametzianov, J.G.Baker, R.Nehme, P.C.Edwards, A.G. G.F.X.Schertler, C.G.Tate
compound source
Molecule: Beta-1 Adrenergic Receptor
Chain: A, B
Fragment: Residues 33-368
Synonym: Beta-1 Adrenoreceptor, Beta-1 Adrenoceptor, Beta-T
Engineered: Yes
Mutation: Yes
Other_details: Residues 3-32 At The N-Terminus And Residues Of The Third Intracellular Loop Were Deleted From The Const Construct Was Truncated After Residue 367 And A Hexahis Tag
Organism_scientific: Meleagris Gallopavo
Organism_common: Turkey
Organism_taxid: 9103
Cell: Erythrocyte
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pbacpak8
symmetry Space Group: P 1 21 1
R_factor 0.229 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.600 61.700 101.400 90.00 109.30 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand 2CV, NA, WHJ, Y01 enzyme
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structural basis for agonist and partial agonist action on a beta(1)-adrenergic receptor., Warne T, Moukhametzianov R, Baker JG, Nehme R, Edwards PC, Leslie AG, Schertler GF, Tate CG, Nature. 2011 Jan 13;469(7329):241-4. PMID:21228877
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (2y02.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (2y02.pdb2.gz) 54 Kb
  • Biological Unit Coordinates (2y02.pdb3.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 2Y02
  • CSU: Contacts of Structural Units for 2Y02
  • Structure Factors (248 Kb)
  • Retrieve 2Y02 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y02 from S2C, [Save to disk]
  • Re-refined 2y02 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y02 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y02
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Y02, from MSDmotif at EBI
  • Fold representative 2y02 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y02_A] [2y02] [2y02_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2Y02
  • Community annotation for 2Y02 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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