2Y05 Oxidoreductase date Nov 30, 2010
title Crystal Structure Of Human Leukotriene B4 12-Hydroxydehydrog Complex With Nadp And Raloxifene
authors W.W.Yue, N.Shafqat, T.Krojer, A.C.W.Pike, F.Von Delft, R.Sethi, P. C.Johansson, C.Arrowsmith, J.Weigelt, A.Edwards, C.Bountra, U.Op
compound source
Molecule: Prostaglandin Reductase 1
Chain: A, B, C, D
Fragment: Mdr Domain, Residues 4-329
Synonym: 15-Oxoprostaglandin 13-Reductase, Nadp-Dependent L B4 12-Hydroxydehydrogenase, Prg-1, Leukotriene B4 12- Hydroxydehydrogenase;
Ec: 1.3.1.-,,
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_vector: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.231
length a length b length c angle alpha angle beta angle gamma
93.274 116.599 154.607 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CL, EDO, NAP, RAL enzyme Oxidoreductase E.C.1.3.1 BRENDA
A, D, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk]
  • Biological Unit Coordinates (2y05.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (2y05.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (2y05.pdb3.gz) 57 Kb
  • Biological Unit Coordinates (2y05.pdb4.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 2Y05
  • CSU: Contacts of Structural Units for 2Y05
  • Structure Factors (1125 Kb)
  • Retrieve 2Y05 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y05 from S2C, [Save to disk]
  • Re-refined 2y05 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y05 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y05
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Y05, from MSDmotif at EBI
  • Fold representative 2y05 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y05_B] [2y05_A] [2y05_C] [2y05] [2y05_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2Y05
  • Community annotation for 2Y05 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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