2Y1M	Ligase	date	Dec 08, 2010
title	Structure Of Native C-Cbl
authors	H.Dou, G.J.Sibbet, D.T.Huang
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Chain: A, B, C, D, E, F Fragment: Residues 47-435 Synonym: Cbl C-Cbl, Casitas B-Lineage Lymphoma Proto-Oncoge Oncogene C-Cbl, Ring Finger Protein 55, Signal Transduction Cbl; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pgex4t1
symmetry	Space Group: C 2 2 21	R_factor 0.218 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 146.800 148.560 348.210 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.67 Å
ligand	CA, ZN	enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Structural basis for autoinhibition and phosphorylation-dependent activation of c-Cbl., Dou H, Buetow L, Hock A, Sibbet GJ, Vousden KH, Huang DT, Nat Struct Mol Biol. 2012 Jan 22;19(2):184-92. doi: 10.1038/nsmb.2231. PMID:22266821

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (379 Kb) [Save to disk] Biological Unit Coordinates (2y1m.pdb1.gz) 67 Kb Biological Unit Coordinates (2y1m.pdb2.gz) 67 Kb Biological Unit Coordinates (2y1m.pdb3.gz) 67 Kb Biological Unit Coordinates (2y1m.pdb4.gz) 67 Kb Biological Unit Coordinates (2y1m.pdb5.gz) 67 Kb Biological Unit Coordinates (2y1m.pdb6.gz) 66 Kb LPC: Ligand-Protein Contacts for 2Y1M CSU: Contacts of Structural Units for 2Y1M Structure Factors (5569 Kb) Retrieve 2Y1M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Y1M from S2C, [Save to disk] Re-refined 2y1m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Y1M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2Y1M

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Y1M, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2y1m_C] [2y1m_F] [2y1m_A] [2y1m_E] [2y1m_D] [2y1m] [2y1m_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2Y1M: [RING ] by SMART

Other resources with information on 2Y1M

Community annotation for 2Y1M at PDBWiki (http://pdbwiki.org)

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