OCA Atlas for 2Y26

2Y26

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
Q, O, E, D, R, B, J, K, N, L, S, T, G, F, M, P, C, A, H, I

Primary reference

Structural Insights into Viral Determinants of Nematode Mediated Grapevine fanleaf virus Transmission., Schellenberger P, Sauter C, Lorber B, Bron P, Trapani S, Bergdoll M, Marmonier A, Schmitt-Keichinger C, Lemaire O, Demangeat G, Ritzenthaler C, PLoS Pathog. 2011 May;7(5):e1002034. Epub 2011 May 19. PMID:21625570

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1584 Kb) [Save to disk]

Biological Unit Coordinates (2y26.pdb1.gz) 4691 Kb

CSU: Contacts of Structural Units for 2Y26

Structure Factors (5205 Kb)

Retrieve 2Y26 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2Y26 from S2C, [Save to disk]

Re-refined 2y26 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Y26 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2y26] [2y26_A] [2y26_B] [2y26_C] [2y26_D] [2y26_E] [2y26_F] [2y26_G] [2y26_H] [2y26_I] [2y26_J] [2y26_K] [2y26_L] [2y26_M] [2y26_N] [2y26_O] [2y26_P] [2y26_Q] [2y26_R] [2y26_S] [2y26_T]

SWISS-PROT database:

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