2Y3Y date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand EPE, NI, PEG enzyme
note 2Y3Y is a representative structure
Primary referenceHolo-Ni(2+)Helicobacter pylori NikR contains four square-planar nickel-binding sites at physiological pH., Benini S, Cianci M, Ciurli S, Dalton Trans. 2011 Aug 21;40(31):7831-3. Epub 2011 Jul 4. PMID:21725560
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (2y3y.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (2y3y.pdb2.gz) 2 Kb
  • LPC: Ligand-Protein Contacts for 2Y3Y
  • CSU: Contacts of Structural Units for 2Y3Y
  • Structure Factors (308 Kb)
  • Retrieve 2Y3Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y3Y from S2C, [Save to disk]
  • Re-refined 2y3y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y3Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y3y] [2y3y_A] [2y3y_B] [2y3y_C] [2y3y_D] [2y3y_Q]
  • SWISS-PROT database:

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