2Y5G date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand FJD, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular Recognition at the Active Site of Factor Xa: Cation-pi Interactions, Stacking on Planar Peptide Surfaces, and Replacement of Structural Water., Salonen LM, Holland MC, Kaib PS, Haap W, Benz J, Mary JL, Kuster O, Schweizer WB, Banner DW, Diederich F, Chemistry. 2011 Dec 9. doi: 10.1002/chem.201102571. PMID:22162109
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (2y5g.pdb1.gz) 177 Kb
  • LPC: Ligand-Protein Contacts for 2Y5G
  • CSU: Contacts of Structural Units for 2Y5G
  • Structure Factors (1172 Kb)
  • Retrieve 2Y5G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y5G from S2C, [Save to disk]
  • Re-refined 2y5g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y5G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y5g] [2y5g_A] [2y5g_L]
  • SWISS-PROT database:
  • Domains found in 2Y5G: [EGF] [Tryp_SPc ] by SMART

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