2Y8W Structure of CRISPR endoribonuclease Cse3 bound to 20 nt RNA date
authors Sashital, D.G., Jinek, M., Doudna, J.A.
compound source
symmetry
R_factor
R_Free 0.2101
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand DG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • endonuclease activity


  • Primary referenceAn RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3., Sashital DG, Jinek M, Doudna JA, Nat Struct Mol Biol. 2011 Jun;18(6):680-7. Epub 2011 May 15. PMID:21572442
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (2y8w.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 2Y8W
  • CSU: Contacts of Structural Units for 2Y8W
  • Structure Factors (149 Kb)
  • Retrieve 2Y8W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y8W from S2C, [Save to disk]
  • Re-refined 2y8w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y8W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y8W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Y8W, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y8w_B] [2y8w_A] [2y8w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2Y8W: [CRISPR_assoc ] by SMART
  • Other resources with information on 2Y8W
  • Community annotation for 2Y8W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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