2YCE	Lyase	date	Mar 14, 2011
title	Structure Of An Archaeal Fructose-1,6-Bisphosphate Aldolase Catalytic Lys Covalently Bound To The Carbinolamine Interme The Substrate.
authors	E.Lorentzen, B.Siebers, R.Hensel, E.Pohl
compound		source
Molecule: Fructose-Bisphosphate Aldolase Class 1 Chain: A, B, C, D, E, F, G, H, I, J Synonym: Fructose-Biphosphate Aldolase Class I, Fbp Aldolas Ec: 4.1.2.13 Engineered: Yes Mutation: Yes Other_details: K177 Covalently Linked To The Carbinolamine The Substrate Fbp		Organism_scientific: Thermoproteus Tenax Organism_taxid: 2271 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet15b
symmetry	Space Group: P 1 21 1	R_factor 0.156 R_Free 0.198
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.900 159.200 101.400 90.00 107.80 90.00
method	X-Ray Diffraction	resolution	1.93 Å
ligand	M2P	enzyme	Lyase E.C.4.1.2.13 BRENDA
note	2YCE supersedes 1W8R
Gene Ontology	Chain Function Process Component F, A, J, E, B, H, C, D, I, G
Primary reference	Mechanism of the Schiff base forming fructose-1,6-bisphosphate aldolase: structural analysis of reaction intermediates., Lorentzen E, Siebers B, Hensel R, Pohl E, Biochemistry. 2005 Mar 22;44(11):4222-9. PMID:15766250

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (818 Kb) [Save to disk] Biological Unit Coordinates (2yce.pdb1.gz) 408 Kb Biological Unit Coordinates (2yce.pdb2.gz) 406 Kb LPC: Ligand-Protein Contacts for 2YCE CSU: Contacts of Structural Units for 2YCE Structure Factors (2547 Kb) Retrieve 2YCE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YCE from S2C, [Save to disk] Re-refined 2yce structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 2YCE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YCE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yce_E] [2yce_I] [2yce] [2yce_J] [2yce_F] [2yce_A] [2yce_H] [2yce_C] [2yce_D] [2yce_B] [2yce_G] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2YCE: [DeoC ] by SMART

Other resources with information on 2YCE

Community annotation for 2YCE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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