2YD0	Hydrolase	date	Mar 17, 2011
title	Crystal Structure Of The Soluble Domain Of Human Endoplasmic Aminopeptidase 1 Erap1
authors	M.Vollmar, G.Kochan, T.Krojer, E.Ugochukwu, J.R.C.Muniz, J.Raynor A.Chaikuad, C.Allerston, F.Von Delft, C.Bountra, C.H.Arrowsmith J.Weigelt, A.Edwards, S.Knapp
compound		source
Molecule: Endoplasmic Reticulum Aminopeptidase 1 Chain: A Fragment: Soluble Domain, Residues 46-940 Synonym: Adipocyte-Derived Leucine Aminopeptidase, Arts-1, Aminopeptidase Pils, Puromycin-Insensitive Leucyl-Specific Aminopeptidase, Type 1 Tumor Necrosis Factor Receptor Shedd Aminopeptidase Regulator, A-Lap, Pils-Ap; Ec: 3.4.11.- Engineered: Yes Other_details: Glycosylation At Residues Asn70, Asn154, Asn		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_cell_line: High Five Expression_system_vector_type: Baculovirus Expression_system_vector: Pfb-Ct10hf-Lic
symmetry	Space Group: P 6 2 2	R_factor 0.152 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 200.948 200.948 114.222 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	BES, EDO, K, NAG, ZN	enzyme	Hydrolase E.C.3.4.11 BRENDA
note	2YD0 supersedes 2XDT
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structures of the endoplasmic reticulum aminopeptidase-1 (ERAP1) reveal the molecular basis for N-terminal peptide trimming., Kochan G, Krojer T, Harvey D, Fischer R, Chen L, Vollmar M, von Delft F, Kavanagh KL, Brown MA, Bowness P, Wordsworth P, Kessler BM, Oppermann U, Proc Natl Acad Sci U S A. 2011 May 10;108(19):7745-50. Epub 2011 Apr 20. PMID:21508329

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk] Biological Unit Coordinates (2yd0.pdb1.gz) 144 Kb LPC: Ligand-Protein Contacts for 2YD0 CSU: Contacts of Structural Units for 2YD0 Structure Factors (542 Kb) Retrieve 2YD0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YD0 from S2C, [Save to disk] Re-refined 2yd0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YD0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yd0] [2yd0_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 2YD0

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