2YDE date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand FE, GOL, S2G, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe oncometabolite 2-hydroxyglutarate inhibits histone lysine demethylases., Chowdhury R, Yeoh KK, Tian YM, Hillringhaus L, Bagg EA, Rose NR, Leung IK, Li XS, Woon EC, Yang M, McDonough MA, King ON, Clifton IJ, Klose RJ, Claridge TD, Ratcliffe PJ, Schofield CJ, Kawamura A, EMBO Rep. 2011 May 1;12(5):463-9. Epub 2011 Apr 1. PMID:21460794
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (2yde.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 2YDE
  • CSU: Contacts of Structural Units for 2YDE
  • Structure Factors (350 Kb)
  • Retrieve 2YDE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YDE from S2C, [Save to disk]
  • Re-refined 2yde structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YDE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yde] [2yde_A]
  • SWISS-PROT database:
  • Domain found in 2YDE: [JmjC ] by SMART

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