2YDP date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand AHR, CA, EDG enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, B, A


Primary referencealpha-L-Arabinofuranosylated pyrrolidines as arabinanase inhibitors., Goddard-Borger ED, Carapito R, Jeltsch JM, Phalip V, Stick RV, Varrot A, Chem Commun (Camb). 2011 Sep 14;47(34):9684-6. Epub 2011 Jul 20. PMID:21773614
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (2ydp.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (2ydp.pdb2.gz) 64 Kb
  • Biological Unit Coordinates (2ydp.pdb3.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 2YDP
  • CSU: Contacts of Structural Units for 2YDP
  • Structure Factors (2052 Kb)
  • Retrieve 2YDP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YDP from S2C, [Save to disk]
  • Re-refined 2ydp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YDP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ydp] [2ydp_A] [2ydp_B] [2ydp_C]
  • SWISS-PROT database:

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