2YFL	Oxidoreductase	date	Apr 06, 2011
title	Crystal Structure Of Biphenyl Dioxygenase Variant Rr41 With 2-Chloro Dibenzofuran
authors	P.Kumar, J.T.Bolin
compound		source
Molecule: Biphenyl Dioxygenase Subunit Alpha Chain: A, C, E, G, I, K Synonym: Biphenyl 2\,3-Dioxygenase Ec: 1.14.12.18 Engineered: Yes Mutation: Yes		Organism_scientific: Burkholderia Xenovorans Organism_taxid: 266265 Strain: Lb400 Variant: Rr41 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21
Molecule: Biphenyl Dioxygenase Subunit Beta Chain: B, D, F, H, J, L Synonym: Biphenyl 2\,3-Dioxygenase Ec: 1.14.12.18 Engineered: Yes		Organism_scientific: Burkholderia Xenovorans Organism_taxid: 266265 Strain: Lb400 Variant: Rr41 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21
symmetry	Space Group: P 1 21 1	R_factor 0.21493 R_Free 0.28023
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.556 275.982 92.057 90.00 117.46 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	DC4, FE2, FES	enzyme	Oxidoreductase E.C.1.14.12.18 BRENDA
Gene Ontology	Chain Function Process Component A, K, E, C, I, G F, J, B, H, D, L
Primary reference	Structural insights into the metabolism of 2-chlorodibenzofuran by an evolved biphenyl dioxygenase., Kumar P, Mohammadi M, Dhindwal S, Pham TT, Bolin JT, Sylvestre M, Biochem Biophys Res Commun. 2012 Apr 22. PMID:22546558

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1262 Kb) [Save to disk] Biological Unit Coordinates (2yfl.pdb1.gz) 643 Kb Biological Unit Coordinates (2yfl.pdb2.gz) 618 Kb LPC: Ligand-Protein Contacts for 2YFL CSU: Contacts of Structural Units for 2YFL Structure Factors (843 Kb) Retrieve 2YFL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YFL from S2C, [Save to disk] Re-refined 2yfl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YFL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yfl] [2yfl_B] [2yfl_H] [2yfl_A] [2yfl_K] [2yfl_E] [2yfl_J] [2yfl_L] [2yfl_C] [2yfl_G] [2yfl_F] [2yfl_D] [2yfl_I] SWISS-PROT database: Domain organization of by SWISSPFAM

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