2YFX	Transferase	date	Apr 08, 2011
title	Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In Com Crizotinib
authors	M.Mctigue, Y.Deng, W.Liu, A.Brooun
compound		source
Molecule: Tyrosine-Protein Kinase Receptor Chain: A Fragment: Kinase Domain, Residues 105-423 Synonym: Anaplastic Lymphoma Kinase Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
symmetry	Space Group: P 21 21 21	R_factor 0.208 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.721 57.174 105.253 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	VGH BindingDB	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	The design of potent and selective inhibitors to overcome clinical ALK mutations resistant to crizotinib., Huang Q, Johnson TW, Bailey S, Brooun A, Bunker KD, Burke BJ, Collins MR, Cook A, Cui JJ, Dack KN, Deal JG, Deng YL, Dinh DM, Engstrom LD, He M, Hoffman J, Hoffman RL, Shen H, Johnson P, Kania RS, Lam H, Lam JL, Le P, Li Q, Lingardo L, Liu W, West Lu M, McTigue MA, Palmer CL, Richardson PF, Sach NW, Smeal T, Smith GL, Stewart AE, Timofeevski SL, Tsaparikos K, Wang H, Zhu H, Zhu J, Zou HY, Edwards M, J Med Chem. 2014 Jan 16. PMID:24432909

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (2yfx.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 2YFX CSU: Contacts of Structural Units for 2YFX Structure Factors (297 Kb) Retrieve 2YFX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YFX from S2C, [Save to disk] Re-refined 2yfx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YFX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YFX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YFX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yfx_A] [2yfx] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2YFX: [TyrKc ] by SMART

Other resources with information on 2YFX

Community annotation for 2YFX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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