2YHE Hydrolase date Apr 29, 2011
title Structure Determination Of The Stereoselective Inverting Sec Alkylsulfatase Pisa1 From Pseudomonas Sp.
authors B.Kepplinger, K.Faber, P.Macheroux, M.Schober, T.Knaus, U.G.Wagne
compound source
Molecule: Sec-Alkyl Sulfatase
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Pseudomonas Sp. Dsm 6611
Organism_taxid: 1007495
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21a
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.734 200.587 245.332 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructure and mechanism of an inverting alkylsulfatase from Pseudomonas sp. DSM6611 specific for secondary alkyl sulfates., Knaus T, Schober M, Kepplinger B, Faccinelli M, Pitzer J, Faber K, Macheroux P, Wagner U, FEBS J. 2012 Dec;279(23):4374-84. doi: 10.1111/febs.12027. Epub 2012 Nov 7. PMID:23061549
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (633 Kb) [Save to disk]
  • Biological Unit Coordinates (2yhe.pdb1.gz) 217 Kb
  • Biological Unit Coordinates (2yhe.pdb2.gz) 213 Kb
  • Biological Unit Coordinates (2yhe.pdb3.gz) 212 Kb
  • LPC: Ligand-Protein Contacts for 2YHE
  • CSU: Contacts of Structural Units for 2YHE
  • Structure Factors (1454 Kb)
  • Retrieve 2YHE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YHE from S2C, [Save to disk]
  • Re-refined 2yhe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YHE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YHE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YHE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yhe_C] [2yhe_B] [2yhe_A] [2yhe_F] [2yhe_E] [2yhe] [2yhe_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2YHE: [Lactamase_B ] by SMART
    • Other resources with information on 2YHE
  • Community annotation for 2YHE at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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