2YIW	Transferase	date	May 17, 2011
title	Triazolopyridine Inhibitors Of P38 Kinase
authors	D.S.Millan, M.Anderson, M.E.Bunnage, J.L.Burrows, K.J.Butcher, P. T.J.Evans, D.A.Fairman, S.J.Hughes, S.L.Irving, I.C.Kilty, A.Lem R.A.Lewthwaite, A.Mahnke, J.P.Mathais, J.Philip, C.Phillips, R.T M.H.Stefamiak, M.Yeadon
compound		source
Molecule: Mitogen-Activated Protein Kinase 14 Chain: A Synonym: Map Kinase 14, Mapk 14, Cytokine Suppressive Anti-Inflammatory Drug-Binding Protein, Csaid-Binding Prot Csbp, Map Kinase Mxi2, Max-Interacting Protein 2, P38 Kina Mitogen-Activated Protein Kinase P38 Alpha, Map Kinase P38 Sapk2a; Ec: 2.7.11.24 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.2207 R_Free 0.2594
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.580 74.320 76.820 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	I46, YIW BindingDB	enzyme	Transferase E.C.2.7.11.24 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Design and Synthesis of Inhaled p38 Inhibitors for the Treatment of Chronic Obstructive Pulmonary Disease., Millan DS, Bunnage ME, Burrows JL, Butcher KJ, Dodd PG, Evans TJ, Fairman DA, Hughes SJ, Kilty IC, Lemaitre A, Lewthwaite RA, Mahnke A, Mathias JP, Philip J, Smith RT, Stefaniak MH, Yeadon M, Phillips C, J Med Chem. 2011 Nov 24;54(22):7797-814. Epub 2011 Oct 28. PMID:21888439

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (2yiw.pdb1.gz) 60 Kb LPC: Ligand-Protein Contacts for 2YIW CSU: Contacts of Structural Units for 2YIW Structure Factors (333 Kb) Retrieve 2YIW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YIW from S2C, [Save to disk] Re-refined 2yiw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YIW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YIW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YIW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yiw] [2yiw_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2YIW: [S_TKc ] by SMART

Other resources with information on 2YIW

Community annotation for 2YIW at PDBWiki (http://pdbwiki.org)

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