OCA Atlas for 2YMZ

2YMZ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BGC, GAL, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
E, A, C, F, B, D

Primary reference

Fine-tuning of prototype chicken galectins: structure of CG-2 and structure-activity correlations., Ruiz FM, Fernandez IS, Lopez-Merino L, Lagartera L, Kaltner H, Menendez M, Andre S, Solis D, Gabius HJ, Romero A, Acta Crystallogr D Biol Crystallogr. 2013 Sep 1;69(Pt 9):1665-76. doi:, 10.1107/S0907444913011773. Epub 2013 Aug 15. PMID:23999290

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]

Biological Unit Coordinates (2ymz.pdb1.gz) 48 Kb

Biological Unit Coordinates (2ymz.pdb2.gz) 46 Kb

Biological Unit Coordinates (2ymz.pdb3.gz) 47 Kb

LPC: Ligand-Protein Contacts for 2YMZ

CSU: Contacts of Structural Units for 2YMZ

Structure Factors (1291 Kb)

Retrieve 2YMZ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2YMZ from S2C, [Save to disk]

Re-refined 2ymz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YMZ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ymz] [2ymz_A] [2ymz_B] [2ymz_C] [2ymz_D] [2ymz_E] [2ymz_F]

SWISS-PROT database:

Domains found in 2YMZ: [GLECT] [Gal-bind_lectin ] by SMART

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