2YNI	Hydrolase	date	Oct 15, 2012
title	Hiv-1 Reverse Transcriptase In Complex With Inhibitor Gsk952
authors	P.Chong, P.Sebahar, M.Youngman, D.Garrido, H.Zhang, E.L.Stewart, R L.Wang, R.G.Ferris, M.Edelstein, K.Weaver, A.Mathis, A.Peat
compound		source
Molecule: Reverse Transcriptaseribonuclease H Chain: A Synonym: Exoribonuclease H, P66 Rt Ec: 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2 Engineered: Yes		Organism_scientific: Hiv-1 M\:B_hxb2r Organism_common: Human Immunodeficiency Virus Type 1 (Hxb2 Organism_taxid: 11706 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pkk233-2 Variant
Molecule: P51 Rt Chain: B Fragment: Residues 588-1015 Engineered: Yes		Organism_scientific: Hiv-1 M\:B_hxb2r Organism_common: Human Immunodeficiency Virus Type 1 (Hxb2 Organism_taxid: 11706 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pkk233-2 Variant
symmetry	Space Group: C 2 2 21	R_factor 0.202 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 118.497 154.577 156.406 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.49 Å
ligand	CXD, MG, TAR	enzyme	Transferase E.C.2.7.7.49 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Rational Design of Potent Non-Nucleoside Inhibitors of HIV-1 Reverse Transcriptase., Chong P, Sebahar P, Youngman M, Garrido D, Zhang H, Stewart EL, Nolte RT, Wang L, Ferris RG, Edelstein M, Weaver K, Mathis A, Peat A, J Med Chem. 2012 Dec 13;55(23):10601-9. doi: 10.1021/jm301294g. Epub 2012 Nov 26. PMID:23137340

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk] Biological Unit Coordinates (2yni.pdb1.gz) 164 Kb LPC: Ligand-Protein Contacts for 2YNI CSU: Contacts of Structural Units for 2YNI Structure Factors (399 Kb) Retrieve 2YNI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YNI from S2C, [Save to disk] Re-refined 2yni structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 2YNI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YNI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yni_A] [2yni_B] [2yni] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 2YNI at PDBWiki (http://pdbwiki.org)

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