2YNN	Protein Transport	date	Oct 17, 2012
title	Yeast Betaprime Cop 1-304 With Ktktn Motif
authors	L.P.Jackson, M.Lewis, H.M.Kent, M.A.Edeling, P.R.Evans, R.Duden, D
compound		source
Molecule: Coatomer Subunit Beta' Chain: A Fragment: Wd40-Repeat Domain, Residues 1-304 Synonym: Beta'-Coat Protein, Beta'-Cop Engineered: Yes Other_details: In Complex With Kxkxx Motif		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmwgst
Molecule: Ktktn Motif Chain: P		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 61	R_factor 0.1621 R_Free 0.1799
crystal cell	length a length b length c angle alpha angle beta angle gamma 129.160 129.160 60.030 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.78 Å
ligand	SO4	enzyme
Primary reference	Molecular Basis for Recognition of Dilysine Trafficking Motifs by COPI., Jackson LP, Lewis M, Kent HM, Edeling MA, Evans PR, Duden R, Owen DJ, Dev Cell. 2012 Nov 20. pii: S1534-5807(12)00480-7. doi:, 10.1016/j.devcel.2012.10.017. PMID:23177648

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk] Biological Unit Coordinates (2ynn.pdb1.gz) 57 Kb Biological Unit Coordinates (2ynn.pdb2.gz) 57 Kb LPC: Ligand-Protein Contacts for 2YNN CSU: Contacts of Structural Units for 2YNN Structure Factors (2138 Kb) Retrieve 2YNN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YNN from S2C, [Save to disk] Re-refined 2ynn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YNN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YNN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YNN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ynn_P] [2ynn_A] [2ynn] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2YNN: [WD40 ] by SMART

Other resources with information on 2YNN

Community annotation for 2YNN at PDBWiki (http://pdbwiki.org)

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