2YNO	Protein Transport	date	Oct 17, 2012
title	Yeast Betaprime Cop 1-304h6
authors	L.P.Jackson, M.Lewis, H.M.Kent, M.A.Edeling, P.R.Evans, R.Duden, D
compound		source
Molecule: Coatomer Subunit Beta' Chain: A, B Fragment: Wd40-Repeat Domain, Residues 1-304 Synonym: Betaprime-Cop, Beta'-Coat Protein, Beta'-Cop Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmw172
Molecule: Poly Ala Chain: P Other_details: Peptide May Be Ctfkktn, Present In Crystalli But Cannot Be Assigned Definitively		Organism_scientific: Unidentified Organism_taxid: 32644
symmetry	Space Group: C 1 2 1	R_factor 0.1880 R_Free 0.2233
crystal cell	length a length b length c angle alpha angle beta angle gamma 171.560 50.510 74.470 90.00 103.99 90.00
method	X-Ray Diffraction	resolution	1.80 Å
Primary reference	Molecular Basis for Recognition of Dilysine Trafficking Motifs by COPI., Jackson LP, Lewis M, Kent HM, Edeling MA, Evans PR, Duden R, Owen DJ, Dev Cell. 2012 Nov 20. pii: S1534-5807(12)00480-7. doi:, 10.1016/j.devcel.2012.10.017. PMID:23177648

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk] Biological Unit Coordinates (2yno.pdb1.gz) 56 Kb Biological Unit Coordinates (2yno.pdb2.gz) 56 Kb Biological Unit Coordinates (2yno.pdb3.gz) 2 Kb CSU: Contacts of Structural Units for 2YNO Structure Factors (4873 Kb) Retrieve 2YNO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YNO from S2C, [Save to disk] Re-refined 2yno structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YNO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YNO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YNO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yno_B] [2yno_A] [2yno] [2yno_P] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2YNO: [WD40 ] by SMART

Other resources with information on 2YNO

Community annotation for 2YNO at PDBWiki (http://pdbwiki.org)

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