2YNY Membrane Protein date Oct 20, 2012
title Salmonella Enterica Sada 255-302 Fused To Gcn4 Adaptors (Sad
authors M.D.Hartmann, B.Hernandez Alvarez, R.Albrecht, A.N.Lupas
compound source
Molecule: General Control Protein Gcn4, Putative Inner Memb Protein;
Chain: A, B, C
Fragment: Gcn4 At Either End, Residues 250-278. Adhesin, Re 255-302;
Synonym: Amino Acid Biosynthesis Regulatory Protein, Autotr Adhesin;
Engineered: Yes
Mutation: Yes
Other_details: N- And C-Terminal In-Register Fusion To Gcn4
 Organism_scientific: Saccharomyces Cerevisiae, Salmonella E Subsp. Enterica Serovar Typhimurium;
Organism_taxid: 4932, 90371
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.133 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.810 40.360 98.620 90.00 93.51 90.00
method X-Ray Diffractionresolution 1.35 Å
Primary referenceComplete fiber structures of complex trimeric autotransporter adhesins conserved in enterobacteria., Hartmann MD, Grin I, Dunin-Horkawicz S, Deiss S, Linke D, Lupas AN, Hernandez Alvarez B, Proc Natl Acad Sci U S A. 2012 Dec 18;109(51):20907-12. doi:, 10.1073/pnas.1211872110. Epub 2012 Dec 3. PMID:23213248
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (2yny.pdb1.gz) 112 Kb
  • CSU: Contacts of Structural Units for 2YNY
  • Structure Factors (803 Kb)
  • Retrieve 2YNY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YNY from S2C, [Save to disk]
  • Re-refined 2yny structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YNY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YNY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YNY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yny] [2yny_A] [2yny_B] [2yny_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2YNY
  • Community annotation for 2YNY at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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